At a Glance
- Tasks: Develop and optimise data pipelines for RNA databases, enhancing scientific research.
- Company: Join EMBL-EBI, a leader in biological data analysis and innovation.
- Benefits: Enjoy competitive salary, flexible working, generous leave, and health insurance.
- Other info: Hybrid working options available with a supportive and inclusive team culture.
- Why this job: Make a real impact in RNA science and support global researchers.
- Qualifications: Master’s degree in a relevant field and proficiency in Python and bioinformatics tools.
The predicted salary is between 39636 - 39636 £ per year.
About the Team Rfam and RNAcentral are key resources for RNA biology, serving tens of thousands of users every year and widely cited in the scientific literature. We are recruiting a Bioinformatics Data Engineer to develop and maintain both the Rfam and RNAcentral databases. They are currently funded by the BBSRC and Wellcome. The RNA Resources team is part of the Sequence Families group led by Alex Bateman. You will be reporting to the Project Leader for RNA Resources, and working closely with an RNA bioinformatician, two full-stack software developers, and an Rfam biocurator.
Your role As a Bioinformatics Data Engineer, you will run, maintain and optimise our data pipelines, ensuring efficient data processing, storage and retrieval for Rfam and RNAcentral. You will work closely with cross-functional teams to analyse requirements, propose new data pipeline architectures, and implement solutions to improve performance and scalability.
The tasks will include:
- Analysing existing data curation and data production pipelines and identifying areas for improvement, optimisation, and scalability.
- Modernising and containerising Rfam curation pipelines, and implementing human-in-the-loop, AI-assisted agentic curation.
- Developing and scaling LLM pipelines used in RNAcentral for literature summarisation and curation.
- Developing scalable workflows for ncRNA annotation in genomes.
- Documenting data pipelines, processes, and workflows for internal reference and knowledge sharing.
- Participating in RNAcentral and Rfam data releases.
You will also be responsible for outreach to the scientific community through presentations at major conferences such as the RNA Society Annual Meeting and ISMB. Additionally, you will present at the RNAcentral consortium meetings and Scientific Advisory Board meetings, gathering regular feedback from community members. Finally, you are expected to keep up to date with the latest developments in RNA science to ensure the resources continue to provide our diverse users with valuable data and analysis.
You should be passionate about RNA science and want to help the scientific community. RNAcentral and Rfam are widely used resources, and this role offers the opportunity to shape the work of many RNA researchers worldwide.
You have Master’s level or equivalent qualification in a computational, biological or related scientific discipline. Proficiency in Python and other relevant languages for bioinformatics tool development. Experience with relational databases (PostgreSQL, MySQL) and SQL: knowledge of PostgreSQL and MySQL database architecture, performance tuning, partitioning strategies, indexing techniques, and query optimisation. Demonstrated track record of developing and maintaining production bioinformatics pipelines with workflow management systems such as Nextflow or Snakemake. Experience building applications with LLMs and other AI technologies. Familiarity with Docker or other containerisation technologies, such as Singularity. Comfortable using Git/GitHub, Unix, and Bash. Experience of using AI assisted coding tools. Ability to apply best-practice software development methodologies. Strong communication skills.
You may also have Knowledge of RNA biology and/or demonstrable practical experience with Rfam, Infernal, R-scape and tools for secondary structure prediction. Familiarity with gene annotation or genome feature representation. Experience with high-performance computing environments such as Slurm. Experience in planning and executing data migration projects, including downtime management, data consistency verification, and rollback strategies. Experience with AI workflow libraries such as LangChain and LangGraph. Experience with Kubernetes and cloud infrastructure platforms such as OpenStack. Experience with the Rust programming language.
Other helpful information Hybrid Working: At EMBL-EBI we are pleased to offer hybrid working options for all our employees. You would be required to work 2 days from the office in Hinxton (currently this is Monday and Tuesday), with the flexibility to come on site more often if preferred.
Interviews: We plan to hold introductory meetings with selected candidates remotely starting in (Early July), following this we plan to hold panel interviews remotely in (Mid July).
Application instructions: To apply, please include both a CV and a tailored Cover letter. Applications submitted without both documents will not be considered.
Contract length: 3 years (Grant based contract). Salary: Grade 5 monthly salary starting at £3,303 per month after tax but excluding pension and insurance contributions. Plus generous benefits.
Why join us Do something meaningful At EMBL-EBI you can apply your talent and passion to accelerate science and tackle some of humankind's greatest challenges. EMBL-EBI, part of the European Molecular Biology Laboratory, is a worldwide leader in the storage, analysis and dissemination of large biological datasets. We provide the global research community with access to publicly available databases and tools which are crucial for the advancement of healthcare, food security, and biodiversity.
Join a culture of innovation We are located on the Wellcome Genome Campus, alongside other prominent research and biotech organisations, and surrounded by beautiful Cambridgeshire countryside. This is a highly collaborative and inclusive community where our employees enjoy a relaxed atmosphere. We are committed to ensuring our employees feel valued, supported and empowered to reach their professional potential.
Enjoy lots of benefits: Financial incentives: Monthly family, child and non-resident allowances, annual salary review, pension scheme, death benefit, long-term care, accident-at-work and unemployment insurances. Flexible working arrangements - including hybrid working patterns. Private medical insurance for you and your immediate family (including all prescriptions and generous dental & optical cover). Generous time off: 30 days annual leave per year, in addition public holidays. Relocation package including installation grant (if required). Campus life: Free shuttle bus to and from work, on-site library, subsidised on-site gym and cafeteria, casual dress code, extensive sports and social club activities (on campus and remotely). Family benefits: On-site nursery, 10 days of child sick leave, generous parental leave, holiday clubs on campus and monthly family and child allowances. Benefits for non-UK residents: Visa exemption, education grant for private schooling, financial support to travel back to your home country every second year and a monthly non-resident allowance.
For detailed information please visit our employee benefits page here.
What else you need to know International applicants: We recruit internationally and successful candidates are offered visa exemptions. Please take a look at our International Applicants page for further information. EMBL is a signatory of DORA. Find out how we apply DORA principles to our recruitment and performance assessment processes here. Diversity and inclusion: At EMBL, we believe that diverse teams drive innovation and scientific excellence. We encourage applications from candidates of all genders, identities, nationalities and/or any other diverse backgrounds.
How to apply: To apply please submit a cover letter and a CV through our online system. Applications will close at 23:59 CET on the date shown below. We aim to provide a response within two weeks after the closing date.
Closing Date 28/06/2026
Bioinformatics Data Engineer (RNA Resources) employer: European Molecular Biology Laboratory
At EMBL-EBI, we offer a unique opportunity for Bioinformatics Data Engineers to contribute to groundbreaking RNA research while enjoying a supportive and inclusive work culture. Located on the Wellcome Genome Campus in the picturesque Cambridgeshire countryside, our employees benefit from flexible hybrid working arrangements, generous leave policies, and a range of financial incentives, all within a collaborative environment that fosters professional growth and innovation.
Contact Details:
European Molecular Biology Laboratory Recruitment Team
StudySmarter Expert Advice🤫
We think this is how you could land Bioinformatics Data Engineer (RNA Resources)
✨Tip Number 1
Network like a pro! Reach out to folks in the RNA and bioinformatics community on LinkedIn or at conferences. A friendly chat can lead to opportunities that aren’t even advertised yet.
✨Tip Number 2
Show off your skills! Create a GitHub repository showcasing your projects, especially those related to bioinformatics pipelines or AI technologies. This gives potential employers a sneak peek into what you can do.
✨Tip Number 3
Prepare for interviews by brushing up on common bioinformatics questions and coding challenges. Practising with friends or using online platforms can help you feel more confident when it’s your turn to shine.
✨Tip Number 4
Don’t forget to apply through our website! It’s the best way to ensure your application gets seen. Plus, we love seeing candidates who are genuinely interested in joining our team.
We think you need these skills to ace Bioinformatics Data Engineer (RNA Resources)
Some tips for your application 🫡
Tailor Your Cover Letter:Make sure your cover letter speaks directly to the role of Bioinformatics Data Engineer. Highlight your experience with data pipelines and any relevant projects you've worked on that align with Rfam and RNAcentral.
Showcase Your Skills:In your CV, don’t just list your skills—demonstrate them! Include specific examples of how you've used Python, SQL, or Docker in past roles. We want to see your hands-on experience!
Be Clear and Concise:Keep your application clear and to the point. Use bullet points where possible to make it easy for us to read through your qualifications and experiences quickly.
Apply Through Our Website:Don’t forget to submit your application through our website! It’s the best way for us to receive your CV and cover letter, ensuring you’re considered for this exciting opportunity.
How to prepare for a job interview at European Molecular Biology Laboratory
✨Know Your RNA
Make sure you brush up on your RNA biology knowledge before the interview. Familiarise yourself with Rfam and RNAcentral, as well as recent developments in RNA science. This will not only show your passion for the field but also help you engage in meaningful discussions with the interviewers.
✨Showcase Your Technical Skills
Be prepared to discuss your experience with Python, SQL, and bioinformatics tools. Bring examples of past projects where you've developed or maintained data pipelines. If you've worked with Docker or AI technologies, highlight those experiences too, as they are crucial for this role.
✨Prepare for Problem-Solving Questions
Expect questions that assess your ability to analyse and optimise data pipelines. Think about specific challenges you've faced in previous roles and how you overcame them. Practising these scenarios can help you articulate your thought process clearly during the interview.
✨Communicate Effectively
Strong communication skills are essential for this role, especially since you'll be working with cross-functional teams. Practice explaining complex technical concepts in simple terms. This will demonstrate your ability to collaborate and share knowledge effectively with others.
