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- Tasks: Curate and integrate transcriptomics datasets for fibrosis research, enhancing data accessibility.
- Company: Join EMBL-EBI, a leader in biological data analysis and dissemination.
- Benefits: Enjoy flexible working, generous leave, private medical insurance, and a vibrant campus life.
- Why this job: Make a real impact in science while collaborating with top researchers in a supportive environment.
- Qualifications: Degree in bioinformatics or related field; experience with transcriptomics datasets and scripting required.
- Other info: 1-year fixed-term contract with potential for international applicants and diverse team culture.
Scientific Database Curator – Fibrosis Transcriptomics
Join to apply for the Scientific Database Curator – Fibrosis Transcriptomics role at European Bioinformatics Institute | EMBL-EBI
Scientific Database Curator – Fibrosis Transcriptomics
Join to apply for the Scientific Database Curator – Fibrosis Transcriptomics role at European Bioinformatics Institute | EMBL-EBI
Get AI-powered advice on this job and more exclusive features.
We are seeking a technically skilled and biologically literate Scientific Database Curator to join a focused initiative on fibrosis research, hosted at EMBL-EBI in collaboration with the Saez-Rodriguez Group and GSK. This is a unique role which combines hands-on data wrangling with biological curation of transcriptomics datasets.
You will curate and integrate publicly available transcriptomics datasets relevant to fibrosis—including bulk, single-cell, and spatial data—helping support active research and therapeutic discovery.
Your role
This is a hands-on role focused on identifying, wrangling, and structuring high-value datasets for integration into Expression Atlas and Single Cell Expression Atlas, while also contributing to the thematic organisation of fibrosis-relevant data within these resources. This may include work on underlying database structures, metadata schemas, and curation flags. The role also contributes to making datasets FAIR (Findable, Accessible, Interoperable, and Reusable) for the broader research community.
You’ll be part of a cross-functional, collaborative environment at EMBL-EBI, working closely with bioinformaticians, software developers, and researchers to refine data flows, improve tooling, and support impactful translational science. Curated datasets will also feed back into GSK’s internal infrastructure, contributing directly to cross-sector research impact.
You have
- A degree in bioinformatics, computational biology, or a related discipline (PhD or equivalent experience is a plus).
- Hands-on experience wrangling transcriptomics datasets—ideally including single-cell and spatial data—from raw input to processed outputs.
- Proficiency with Bash scripting and Git as part of your daily toolkit.
- Familiarity with relational databases (e.g. Oracle, MySQL) and biological metadata models.
- Strong data handling skills: extracting, cleaning, validating, and transforming metadata in structured formats (e.g. TSV, JSON).
- A collaborative and adaptable mindset, with a willingness to learn new tools and contribute to evolving standards and workflows.
- Meticulous attention to detail, and an ability to troubleshoot data inconsistencies or pipeline blockers.
- Excellent written English
- Excellent communication, time-management and organisational skills
You may also have
- Background in fibrosis, inflammation, immunology, or tissue biology.
- Familiarity with JSON Schema and ontology-based validation frameworks.
- Comfort writing or adapting Python or R scripts for data wrangling and validation tasks.
- Practical knowledge of public gene expression archives (e.g. GEO, ArrayExpress, SRA, BioStudies).
- Experience working in an agile development environment or contributing to cross-functional teams involving developers and scientists.
- An interest in open science practices, including working with open-source tools and publicly available datasets.
Contract length: 1 year fixed-term (project-limited funded by GSK grant). We are ideally looking for someone who can start early September 2025.
Salary: Grade 4 or Grade 5 depending on qualifications and experience, monthly salary at £2,995 or £3,229 after tax but excluding pension and health insurance contributions. Plus generous benefits.
Interviews: we plan to hold interview in August. Details will be confirmed with selected candidates.
Why join us
Do something meaningful
At EMBL-EBI you can apply your talent and passion to accelerate science and tackle some of humankind\’s greatest challenges. EMBL-EBI, part of the European Molecular Biology Laboratory, is a worldwide leader in the storage, analysis and dissemination of large biological datasets. We provide the global research community with access to publicly available databases and tools which are crucial for the advancement of healthcare, food security, and biodiversity.
Join a culture of innovation
We are located on the Wellcome Genome Campus, alongside other prominent research and biotech organisations, and surrounded by beautiful Cambridgeshire countryside. This is a highly collaborative and inclusive community where our employees enjoy a relaxed atmosphere. We are committed to ensuring our employees feel valued, supported and empowered to reach their professional potential. Watch this video to see how EMBL-EBI makes an impact.
Enjoy Lots Of Benefits
- Financial incentives: Monthly family, child and non-resident allowances, annual salary review, pension scheme, death benefit, long-term care, accident-at-work and unemployment insurances
- Flexible working arrangements – including hybrid working patterns
- Private medical insurance for you and your immediate family (including all prescriptions and generous dental & optical cover)
- Generous time off: 30 days annual leave per year, in addition public holidays
- Relocation package including installation grant (if required)
- Campus life: Free shuttle bus to and from work, on-site library, subsidised on-site gym and cafeteria, casual dress code, extensive sports and social club activities (on campus and remotely)
- Family benefits: On-site nursery, 10 days of child sick leave, generous parental leave, holiday clubs on campus and monthly family and child allowances
- Benefits for non-UK residents: Visa exemption, education grant for private schooling, financial support to travel back to your home country every second year and a monthly non-resident allowance.
For detailed information please visit our employee benefits page here.
What else you need to know
- International applicants: We recruit internationally and successful candidates are offered visa exemptions. Please take a look at our International Applicants page for further information.
- EMBL is a signatory of DORA. Find out how we apply DORA principles to our recruitment and performance assessment processes here.
- Diversity and inclusion: At EMBL, we strongly believe that inclusive and diverse teams benefit from higher levels of innovation and creative thought. We encourage applications from women, LGBTQ+ & individuals from all nationalities.
- How to apply: To apply please submit a cover letter and a CV through our online system. Applications will close at 23:59 CET on the date shown below. We aim to provide a response within two weeks after the closing date.
Closing Date
20/07/2025
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Scientific Database Curator – Fibrosis Transcriptomics employer: European Bioinformatics Institute | EMBL-EBI
Contact Detail:
European Bioinformatics Institute | EMBL-EBI Recruiting Team
StudySmarter Expert Advice 🤫
We think this is how you could land Scientific Database Curator – Fibrosis Transcriptomics
✨Tip Number 1
Familiarise yourself with the latest trends and technologies in transcriptomics, especially focusing on fibrosis research. This will not only help you understand the role better but also allow you to engage in meaningful conversations during interviews.
✨Tip Number 2
Network with professionals in the bioinformatics and fibrosis research community. Attend relevant conferences or webinars where you can meet potential colleagues and learn more about the work being done at EMBL-EBI.
✨Tip Number 3
Brush up on your skills in Bash scripting and Git, as these are essential tools for the role. Consider working on personal projects or contributing to open-source initiatives to demonstrate your proficiency.
✨Tip Number 4
Prepare to discuss your experience with data handling and curation in detail. Be ready to provide examples of how you've tackled data inconsistencies or improved data workflows in previous roles.
We think you need these skills to ace Scientific Database Curator – Fibrosis Transcriptomics
Some tips for your application 🫡
Tailor Your Cover Letter: Make sure to customise your cover letter for the Scientific Database Curator role. Highlight your experience with transcriptomics datasets and your proficiency in Bash scripting and Git, as these are key requirements for the position.
Showcase Relevant Experience: In your CV, emphasise any hands-on experience you have with data wrangling, particularly with single-cell and spatial data. Include specific examples of projects where you've curated or integrated biological datasets.
Highlight Collaboration Skills: Since the role involves working closely with bioinformaticians and researchers, mention any previous collaborative projects. Discuss how you contributed to team efforts and adapted to evolving standards and workflows.
Proofread for Clarity: Before submitting your application, carefully proofread your documents. Ensure that your written English is clear and free of errors, as excellent communication skills are essential for this role.
How to prepare for a job interview at European Bioinformatics Institute | EMBL-EBI
✨Showcase Your Technical Skills
Be prepared to discuss your hands-on experience with transcriptomics datasets. Highlight specific projects where you've wrangled data, and be ready to explain the tools and techniques you used, such as Bash scripting and Git.
✨Demonstrate Biological Literacy
Since this role involves biological curation, brush up on your knowledge of fibrosis and related fields. Be ready to discuss how your background in bioinformatics or computational biology aligns with the requirements of the position.
✨Emphasise Collaboration
This role is part of a cross-functional team, so highlight your collaborative experiences. Share examples of how you've worked with bioinformaticians, software developers, or researchers to achieve common goals.
✨Prepare for Data Handling Questions
Expect questions about your data handling skills, particularly around extracting, cleaning, and validating metadata. Be ready to provide examples of how you've tackled data inconsistencies or pipeline blockers in past projects.
