Senior Automation Specialist - Pathogen

Senior Automation Specialist - Pathogen

Oxford Full-Time 28800 - 48000 £ / year (est.) No home office possible
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At a Glance

  • Tasks: Join us as a Senior Automation Specialist to develop cutting-edge lab automation solutions.
  • Company: The Ellison Institute of Technology tackles global challenges through innovative science and technology.
  • Benefits: Enjoy competitive salary, enhanced holiday pay, private medical insurance, and more perks.
  • Why this job: Be part of a collaborative culture that values creativity and makes a real impact on society.
  • Qualifications: Bachelor's, Master's, or Ph.D. in relevant fields with hands-on experience in automation.
  • Other info: Must be eligible to work in the UK and willing to travel as needed.

The predicted salary is between 28800 - 48000 £ per year.

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The Ellison Institute of Technology (EIT) tackles humanity\’s greatest challenges by turning science and technology into impactful global solutions. Focused on areas like health, food security, sustainable agriculture, climate change, clean energy, and robotics in an era of artificial intelligence. EIT blends groundbreaking research with practical applications to deliver lasting results.
A cornerstone of EIT mission is its upcoming 300,000-square-foot research facility at the Oxford Science Park, set to open in 2027. This cutting-edge campus will feature advanced labs, an oncology and preventative care clinic, and collaborative spaces to strengthen its partnership with the University of Oxford. It will also host the Ellison Scholars, driving innovation for societal benefit.
The Pathogen Mission highlights EIT\’s transformative approach, using Whole Genome Sequencing (WGS) and Oracle\’s cloud technology to create a global pathogen metagenomics system. This initiative aims to improve diagnostics, provide early epidemic warnings, and guide treatments by profiling antimicrobial resistance. The goal is to deliver certified diagnostic tools for widespread use in labs, hospitals, and public health.
EIT fosters a culture of collaboration, innovation, and resilience, valuing diverse expertise to drive sustainable solutions to humanity\’s enduring challenges.
Job Summary:
We are seeking a highly skilled and hands-on Senior Automation Specialist to support the development and scaling of advanced laboratory automation solutions within its Pathogen Program. This role will help establish automation capabilities for high-throughput workflows in genomics and phenotypic characterisation of pathogens, with flexibility to expand into other research domains.
EIT\’s longer-term vision is to build an AI-driven autonomous laboratory, where experimental workflows are dynamically designed, executed, and optimised through integrated robotics, sensors, informatics, and machine learning. The ideal candidate will bring experience in this emerging frontier of scientific automation.
You will play a key role in building robust automated processes, programming and integrating robotic platforms, supporting users, and contributing to the foundation of a scalable and intelligent lab environment.
Requirements
Automation Design and Implementation

  • Contribute to the development of automation strategies supporting high-throughput sequencing and phenotyping workflows
  • Assist in evaluating and deploying liquid handling systems, lab robotics, and scheduling software
  • Build and maintain automated protocols for sample preparation, nucleic acid extraction, library prep, and functional assays

System Integration and Programming

  • Program and maintain robotic systems (e.g., Hamilton, Tecan, Beckman Coulter) and integrate them with lab instrumentation (e.g., incubators, thermocyclers, plate readers)
  • Support the setup and configuration of orchestration tools (e.g., Cellario, Green Button Go, Momentum)
  • Troubleshoot process and equipment issues using a rigorous and methodical engineering approach

Collaboration and Support

  • Work closely with scientists and data teams to convert manual protocols into reproducible automated workflows
  • Train lab users on automated systems, support method transfers, and contribute to SOP documentation and change control processes

Biosafety and Lab Integration

  • Support the implementation of automation systems within BSL-2 and BSL-3 environments, ensuring compliance with safety and regulatory requirements
  • Help optimizs equipment layouts and workflows within these controlled lab settings

Essential Knowledge, Skills and Experience:

  • Bachelor\’s, Master\’s, or Ph.D. in Bioengineering, Robotics, Molecular Biology, or a related field, or equivalent hands-on experience.
  • Proficiency with liquid handlers (e.g., Tecan, Hamilton, Beckman Coulter) and integration of lab instruments
  • Strong scripting and automation programming skills (e.g., VENUS, EVOware, Python) and familiarity with orchestration platforms
  • Demonstrated ability to develop, test, and troubleshoot complex automated workflows

Desirable Knowledge, Skills and Experience:

  • Experience in pathogen genomics or phenotyping, especially within BSL-2/BSL-3 laboratories
  • Familiarity with LIMS systems and data-integrated lab environments
  • Understanding of molecular workflows such as DNA/RNA extraction, qPCR, library preparation, and AST/MIC assays
  • Experience mentoring or training scientists and technicians on automated platforms
  • Experience in AI-driven lab automation, including integration of sensors, machine learning models, or closed-loop experimentation systems

Benefits
We offer the following salary and benefits:

  • Salary: Competitive salary on offer
  • Enhanced holiday pay
  • Pension
  • Life Assurance
  • Income Protection
  • Private Medical Insurance
  • Hospital Cash Plan
  • Therapy Services
  • Perk Box
  • Electrical Car Scheme

Why work for EIT:
At the Ellison Institute, we believe a collaborative, inclusive team is key to our success. We are building a supportive environment where creative risks are encouraged, and everyone feels heard. Valuing emotional intelligence, empathy, respect, and resilience, we encourage people to be curious and to have a shared commitment to excellence. Join us and make an impact!
Terms of Appointment:

  • You must have the right to work permanently in the UK with a willingness to travel as necessary
  • You will live in, or within easy commuting distance of, Oxford
  • During peak periods, some longer hours may be required and some working across multiple time zones due to the global nature of the programme

Seniority level

  • Seniority level

    Mid-Senior level

Employment type

  • Employment type

    Full-time

Job function

  • Job function

    Science

  • Industries

    IT Services and IT Consulting

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Senior Automation Specialist - Pathogen employer: Ellison Institute of Technology Oxford

The Ellison Institute of Technology (EIT) is an exceptional employer, offering a dynamic and collaborative work environment that fosters innovation and creativity. Located at the Oxford Science Park, EIT provides employees with access to cutting-edge research facilities and opportunities for professional growth in the fields of genomics and automation. With a strong commitment to employee well-being, EIT offers competitive salaries, comprehensive benefits, and a culture that values diversity and inclusion, making it an ideal place for those looking to make a meaningful impact in science and technology.
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Contact Detail:

Ellison Institute of Technology Oxford Recruiting Team

StudySmarter Expert Advice 🤫

We think this is how you could land Senior Automation Specialist - Pathogen

✨Tip Number 1

Familiarise yourself with the specific automation technologies mentioned in the job description, such as Hamilton, Tecan, and Beckman Coulter. Having hands-on experience or even a solid understanding of these systems will give you an edge during discussions.

✨Tip Number 2

Network with professionals in the field of laboratory automation and genomics. Attend relevant conferences or webinars to connect with potential colleagues at EIT, which can help you gain insights into their work culture and expectations.

✨Tip Number 3

Prepare to discuss your experience with high-throughput workflows and how you've successfully implemented automation solutions in previous roles. Be ready to share specific examples that demonstrate your problem-solving skills and technical expertise.

✨Tip Number 4

Showcase your ability to collaborate effectively with scientists and data teams. Highlight any past experiences where you converted manual protocols into automated workflows, as this aligns closely with the responsibilities of the role.

We think you need these skills to ace Senior Automation Specialist - Pathogen

Automation Design and Implementation
Liquid Handling Systems Proficiency
Robotic Systems Programming
Integration of Lab Instruments
Orchestration Tools Configuration
Troubleshooting Skills
Collaboration with Scientific Teams
Training and Mentoring Skills
Biosafety Compliance Knowledge
Experience in BSL-2/BSL-3 Laboratories
Scripting and Automation Programming (e.g., Python, VENUS)
Understanding of Molecular Workflows
AI-driven Lab Automation Experience
Data-integrated Lab Environments Familiarity

Some tips for your application 🫡

Tailor Your CV: Make sure your CV highlights relevant experience in automation, robotics, and laboratory environments. Emphasise any specific projects or roles that align with the responsibilities outlined in the job description.

Craft a Compelling Cover Letter: In your cover letter, express your passion for the role and the mission of the Ellison Institute of Technology. Mention how your skills in automation and programming can contribute to their Pathogen Program and the vision of an AI-driven autonomous laboratory.

Showcase Technical Skills: Clearly list your technical skills related to liquid handling systems, programming languages, and orchestration platforms. Provide examples of how you've successfully implemented these skills in previous roles.

Highlight Collaborative Experience: Since collaboration is key at EIT, include examples of how you've worked with scientists or cross-functional teams to develop automated workflows. This will demonstrate your ability to fit into their culture of teamwork and innovation.

How to prepare for a job interview at Ellison Institute of Technology Oxford

✨Showcase Your Technical Skills

Make sure to highlight your proficiency with liquid handling systems and automation programming languages like Python. Be prepared to discuss specific projects where you've successfully implemented automation solutions, as this will demonstrate your hands-on experience.

✨Understand the Company’s Mission

Familiarise yourself with the Ellison Institute of Technology's goals, especially their focus on health and pathogen research. Showing that you understand their mission and how your role contributes to it can set you apart from other candidates.

✨Prepare for Scenario-Based Questions

Expect questions that assess your problem-solving skills in real-world scenarios. Think about challenges you've faced in previous roles, particularly in BSL-2/BSL-3 environments, and how you overcame them. This will showcase your ability to handle complex situations.

✨Emphasise Collaboration and Training Experience

Since the role involves working closely with scientists and training lab users, be ready to discuss your experience in mentoring or training others. Highlight any collaborative projects that demonstrate your ability to work effectively within a team.

Senior Automation Specialist - Pathogen
Ellison Institute of Technology Oxford
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