Application Scientist

About AQEMIA

AQEMIA is a next‑gen pharmatech company generating one of the world’s fastest‑growing drug discovery pipelines. Our mission is to design fast, innovative drug candidates for dozens of critical diseases, such as immuno‑oncology. Our unique approach leverages quantum‑inspired physics algorithms to power generative AI in designing novel drug candidates—without relying on experimental data. We have already delivered several drug discovery successes within our internal pipeline and through collaborations with pharmaceutical companies; our most advanced programs are currently in in‑vivo optimisation.

About The Team

The mission of the Molecular Simulations Team is threefold:

• Support drug discovery programmes by maximising the impact of binding free energy calculations in decision‑making
• Build, benchmark and continuously improve reproducible and scalable pipelines for binding free energy calculations, enabling support for multiple programmes in parallel
• Collaborate closely with our Physics Research Team to integrate innovations from AQEMIA’s proprietary binding free energy methods

Role Overview

As an Application Scientist in the Molecular Simulations Team, you will work at the interface of molecular modelling, statistical physics and drug discovery. Your focus will be on applying, implementing and improving AQEMIA’s physics‑based simulation methods to guide medicinal and computational chemistry and help identify high‑potential drug candidates.

What You’ll Do

• Execute molecular simulations (e.g., free energy calculations, molecular dynamics) to support drug discovery programmes
• Analyse simulation results to generate insights for project teams
• Collaborate with computational chemists, biologists, AI researchers and medicinal chemists to design simulation strategies
• Contribute to the optimisation of internal protocols and workflows
• Document and present findings to multidisciplinary teams

Qualifications & Experience

• MSc or PhD in Computational Chemistry, Biophysics, Statistical Mechanics or a related field
• Hands‑on experience with Molecular Dynamics, free energy methods or protein‑ligand modelling
• Proficiency in Python and simulation tools such as GROMACS, AMBER, OpenMM
• Strong communication skills and a collaborative mindset

Nice-to-have

• Experience in machine learning applications for physics‑based modelling
• Track record of scientific publications and contributions to the computational drug discovery community

Preferred Mindset

Scientific Rigour: Committed to high standards of accuracy, reproducibility and method validation.

Humble and Willing to Learn: Open to feedback and continuously seeking to grow scientifically and professionally.

Excited by Challenging Scientific Problems: Motivated by tackling complex, unsolved questions at the frontier of molecular simulation.

Pragmatic and Impact‑Driven: Focused on delivering practical outcomes that drive real‑world impact in drug discovery.

Polite note: UK visa sponsorship not currently available for this role at this time.

AQEMIA’s Recruitment team leads all recruitment activities for the company. We will not recognise any notional ownership recruitment companies’ claim over candidates presented directly to hiring managers without our Recruitment team’s consent. Unsolicited resumes sent to us from recruiters do not constitute any type of relationship between the recruiter and AQEMIA, and we will not be obligated to pay fees should we hire from those resumes.

Why Join Us?

At AQEMIA, we work for a mission: joining us means having your own impact on changing the way drugs are discovered, and helping to shape the direction of our fast‑growing company and team.

Expanding Drug Discovery Pipeline : Focused on critical therapeutic areas such as Oncology, CNS, Immuno‑inflammation with in‑vivo proof of concept/patent‑stage programmes. Collaborations with top Pharma, including a $140M Sanofi deal.

Interdisciplinary Team : Brilliant talent from tech and life sciences.

DeepTech Recognition : Part of French Tech 120 and France 2030.

Prime Location : Based in central Paris and London (King’s Cross) with the possibility of 2 remote days per week.

International Environment : The working language is English – relocation support and French lessons granted if needed.

Strong Financial Backing : $100M raised from leading European and International investors.

We may use artificial intelligence (AI) tools to support parts of the hiring process, such as reviewing applications, analysing resumes or assessing responses. These tools assist our recruitment team but do not replace human judgment. Final hiring decisions are ultimately made by humans. If you would like more information about how your data is processed, please contact us.

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