At a Glance
- Tasks: Support bioimaging data management and collaborate with a global scientific community.
- Company: Join EMBL-EBI, a leading institute in biological data management.
- Benefits: Competitive salary, generous benefits, and opportunities for professional growth.
- Other info: Diverse and inclusive environment with international recruitment and career development opportunities.
- Why this job: Shape the future of bioimaging data sharing and make a real impact.
- Qualifications: Degree in Biology, Bioinformatics, or Computer Science; experience in data handling and scripting.
The predicted salary is between 41425 - 41425 £ per year.
The revolution in imaging technologies has led to the need to share, integrate and reuse image data in a comprehensive way.
EMBL-EBI’s imaging databases, EMPIAR and the Bio Image Archive provide the means to store and search life science datasets from all imaging technologies at all scales and across all modalities.
These databases provide deposition and retrieval services to life scientists across the world.
We are looking for an enthusiastic and motivated imaging bioinformatician who can work with researchers, imaging scientists, software developers and the wider Bio Imaging community to further develop these resources, with a focus on worldwide sharing of bioimaging data.
What you’ll do
You will be working to support our resources’ operational and data management development activities.
You’ll support depositors to the Bio Image Archive and EMPIAR, providing expertise, guidance and targeted curation.
You’ll work with data generators, data consumers and networking organisations on data and metadata standards, both working with schema and tools directly and relaying needs and priorities to the core software development team.
Using AI approaches to improve our operational activities will be a key part of the role.
As the Bio Image Archive is a developing project, you will be able to shape its development, community and overall success.
You’ll need to be keen to learn new approaches and technologies, work with a diverse global biological imaging community and engage with new imaging science.
The post provides a fantastic opportunity to work with a talented team to grow a key new resource at one of the world leading institutes for managing biological data.
- Primary duties & responsibilities
- Support data deposition and import of data into the Bio Image Archive and EMPIAR, providing expert advice to depositors, and developing data pipelines for complex submissions
- Work with the bioimaging community on standards, processes and tools for managing biological images, including programmatic implementation of metadata in schema languages, and participation in community format development, e. g.
- OME-Zarr
- Curate and standardise data and metadata across different scientific domains to address the needs of diverse bioimaging communities.
- Work with software developers within the Bio Image Archive, EMPIAR and the wider EMBL-EBI teams to guide development priorities and test new features
- Create documentation and training materials to support users of the Bio Image Archive
- You will have
- You should have a first degree in Biology, Bioinformatics, Computer Science or a related discipline, and a relevant higher degree such as a MSc.
A Ph D or equivalent work experience is preferred.
- Skills and experience Good understanding of data collection, handling, visualisation, interpretation, archiving, dissemination etc. for at least one common imaging modality (e. g. light or electron microscopy)
- Experience developing scripts and tools for data transformation and processing (e. g. in Python, Julia or similar languages)
- Experience working with common data exchange formats, particularly JSON
- Demonstrated knowledge of research imaging techniques broadly
- Familiarity with data standards and ontologies, and experience with schema languages such as Link ML
- Personal attributes Curiosity about science and bioimaging
- A strong desire to learn new skills and technologies
- Excellent communication and interpersonal skills
- Ability to work to tight deadlines
- The ability to work both independently and as part of a team
- You may also have Post-doctoral experience in a life sciences research lab or bioimaging facility, either as a data producer or as a collaborator with data producers on microscopy data management and/or image processing
- Specific experience working with cross-modality biological data with an imaging component, e. g. spatial transcriptomics or spatial proteomics
- Specific experience working with emerging/next generation file formats, particularly OME-Zarr
- Experience with the management of research data, including understanding of and adherence to appropriate metadata standards
- Experience with bioimage analysis tools and techniques
- Experience working with semantic technologies including ontologies, data curation and JSON schema-based data validation
- Experience developing training materials and/or running training courses
Contract length: Grant-funded, 18 month fixed-term Staff Member contract.
Salary: Grade 5 - Monthly salary starting at £3,452.05 per month after tax but excluding pension and insurance contributions. Plus, generous benefits.
- Closing Date 02/09/2026
- What else you need to know
International applicants: We recruit internationally and successful candidates are offered visa exemptions.
Please take a look at our International Applicants page for further information.
EMBL is a signatory of DORA.
Find out how we apply DORA principles to our recruitment and performance assessment processes here.
Diversity and inclusion: At EMBL, we believe that diverse teams drive innovation and scientific excellence.
We encourage applications from candidates of all genders, identities, nationalities and/or any other diverse backgrounds.
Whether you're a scientist, IT specialist, accountant or administrator, you'll help us tackle the challenges of improving human health & biodiversity in the face of climate change on a global scale.
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BioImaging Bioinformatician employer: 1000 European Molecular Biology Laboratory
At EMBL-EBI, we pride ourselves on being an exceptional employer, offering a dynamic work environment that fosters collaboration and innovation in the field of structural biology. Our hybrid working model allows for flexibility, while our comprehensive benefits package, including generous parental leave and private medical insurance, ensures the well-being of our employees and their families. With ample opportunities for professional growth and a commitment to diversity and inclusion, joining our team means contributing to groundbreaking research while enjoying a supportive and engaging workplace in the picturesque setting of Hinxton.
Contact Details:
1000 European Molecular Biology Laboratory Recruitment Team
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